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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9875 and 9876 are separated by 359 nucleotides
9876 and 9877 are separated by 535 nucleotides
9877 and 9878 are separated by 757 nucleotides
9878 and 9879 are separated by 91 nucleotides
mRNA_1507: 9875 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 469,945 to 470,941
9875
mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471,301 to 473,619
9876
mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474,155 to 475,425
9877
mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476,183 to 478,334
9878
mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478,426 to 481,591
9879
Group
Condition
mRNA
_1507
mRNA
_1508
mRNA
_1509
mRNA
_1510
mRNA
_1511
9875
9876
9877
9878
9879
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-0.1
-0.2
-1.2
growth on oleic acid
YNB Glucose
-0.3
-0.6
-0.4
+0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.1
-0.6
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
-0.1
+0.5
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.6
+0.1
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.6
-0.4
-0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
-0.4
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.9
-0.3
-0.6
+0.0
growth on ypd
YPD
-0.1
-1.3
+0.1
+0.0
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
-0.0
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.9
-0.5
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.6
-0.7
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.9
-0.2
+0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.3
+0.4
-0.2
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.5
+0.3
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.7
+0.1
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
-0.1
+0.3
+1.0
auxotrophy
Dropout Complete
-0.4
+0.1
+0.2
+0.8
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.5
+0.1
-0.1
+0.7
auxotrophy
YNB Glucose
-0.4
+0.5
+0.1
+0.5
+0.7
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