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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9878 and 9879 are separated by 91 nucleotides
9879 and 9880 are separated by 219 nucleotides
9880 and 9881 are separated by 145 nucleotides
9881 and 9882 are separated by 104 nucleotides
mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476,183 to 478,334
9878
mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478,426 to 481,591
9879
mRNA_1512: 9880 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 481,811 to 485,314
9880
mRNA_1513: 9881 - K13280 SEC11, sipW signal peptidase, endoplasmic reticulum-type, at 485,460 to 486,499
9881
mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486,604 to 488,267
9882
Group
Condition
mRNA
_1510
mRNA
_1511
mRNA
_1512
mRNA
_1513
mRNA
_1514
9878
9879
9880
9881
9882
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.2
-0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.0
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.6
-0.3
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.2
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
-0.7
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.5
-0.4
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
+0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.7
+0.0
N.D.
+0.0
growth on ypd
YPD
+0.0
+0.9
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.5
+0.7
+0.1
N.D.
-0.3
auxotrophy
Dropout Complete
+0.8
+0.5
+0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+1.0
+0.1
N.D.
-0.1
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