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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9882 and 9883 are separated by 178 nucleotides
9883 and 9884 are separated by 405 nucleotides
9884 and 9885 are separated by 882 nucleotides
9885 and 9886 are separated by 624 nucleotides
mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486,604 to 488,267
9882
mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488,446 to 491,742
9883
mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492,148 to 493,899
9884
mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494,782 to 496,298
9885
mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496,923 to 498,027
9886
Group
Condition
mRNA
_1514
mRNA
_1515
mRNA
_1516
mRNA
_1517
mRNA
_1518
9882
9883
9884
9885
9886
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
-0.1
-2.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.8
N.D.
-0.3
-2.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.9
N.D.
-0.4
-1.7
growth on oleic acid
YNB Oleic Acid
+0.0
+0.6
N.D.
-0.6
-1.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
N.D.
-0.1
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
N.D.
+0.1
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.0
-1.2
growth on oleic acid
YNB Glucose
-0.1
+0.4
N.D.
-0.1
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.8
N.D.
-0.4
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.2
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
N.D.
+0.3
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
N.D.
+0.3
-0.9
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
N.D.
+0.2
-0.7
growth on ypd
YPD
+0.1
-0.2
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.5
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
N.D.
+0.3
+0.4
auxotrophy
Dropout Complete
-0.2
+0.4
N.D.
+0.2
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
N.D.
-0.2
+0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose
-0.3
+0.6
N.D.
+0.1
+0.7
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