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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9883 and 9884 are separated by 405 nucleotides
9884 and 9885 are separated by 882 nucleotides
9885 and 9886 are separated by 624 nucleotides
9886 and 9887 are separated by 458 nucleotides
mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488,446 to 491,742
9883
mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492,148 to 493,899
9884
mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494,782 to 496,298
9885
mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496,923 to 498,027
9886
mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498,486 to 499,593
9887
Group
Condition
mRNA
_1515
mRNA
_1516
mRNA
_1517
mRNA
_1518
mRNA
_1519
9883
9884
9885
9886
9887
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.1
-2.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.1
-1.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.1
-1.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
-0.3
-2.4
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
-0.4
+0.6
-0.2
growth on oleic acid
YNB Oleic Acid
+0.6
N.D.
-0.6
-1.6
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.3
-0.9
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-1.2
+0.5
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.1
-1.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.2
-0.9
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
N.D.
-0.4
-1.7
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.3
-1.3
+0.2
growth on ypd
YPD
-0.2
N.D.
+0.3
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
+0.2
-0.7
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.1
-0.0
+0.1
auxotrophy
Dropout Complete
+0.4
N.D.
+0.2
+0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.2
+0.9
+0.5
auxotrophy
YNB Glucose
+0.6
N.D.
+0.1
+0.7
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
+0.3
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.3
+0.4
+0.9
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