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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9884 and 9885 are separated by 882 nucleotides
9885 and 9886 are separated by 624 nucleotides
9886 and 9887 are separated by 458 nucleotides
9887 and 9888 are separated by 316 nucleotides
mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492,148 to 493,899
9884
mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494,782 to 496,298
9885
mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496,923 to 498,027
9886
mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498,486 to 499,593
9887
mRNA_1520: 9888 - K00765 hisG ATP phosphoribosyltransferase, at 499,910 to 501,221
9888
Group
Condition
mRNA
_1516
mRNA
_1517
mRNA
_1518
mRNA
_1519
mRNA
_1520
9884
9885
9886
9887
9888
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-2.4
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-2.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-1.5
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
-1.6
+0.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-1.7
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-1.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-1.2
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-1.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-1.2
+0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-0.9
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.9
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
+0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.7
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
+0.1
N.D.
growth on ypd
YPD
N.D.
+0.3
-0.0
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
+0.6
-0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
+0.7
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.2
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.9
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.4
+0.9
N.D.
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