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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9887 and 9888 are separated by 316 nucleotides
9888 and 9889 are separated by 269 nucleotides
9889 and 9890 are separated by 662 nucleotides
9890 and 9891 are separated by 146 nucleotides
mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498,486 to 499,593
9887
mRNA_1520: 9888 - K00765 hisG ATP phosphoribosyltransferase, at 499,910 to 501,221
9888
mRNA_1521: 9889 - HMMPfam-DNA polymerase delta, subunit 4-PF04081, at 501,491 to 502,163
9889
mRNA_1522: 9890 - K06685 MOB1, Mats MOB kinase activator 1, at 502,826 to 504,110
9890
mRNA_1523: 9891 - Hypothetical Protein, at 504,257 to 504,927
9891
Group
Condition
mRNA
_1519
mRNA
_1520
mRNA
_1521
mRNA
_1522
mRNA
_1523
9887
9888
9889
9890
9891
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
-2.0
-0.4
growth on ypd
YPD
+0.0
N.D.
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
N.D.
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
N.D.
+0.5
-0.3
auxotrophy
Dropout Complete
-0.0
N.D.
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
N.D.
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose
+0.0
N.D.
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
N.D.
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.4
N.D.
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
N.D.
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
N.D.
+0.5
+0.3
growth on oleic acid
YNB Oleic Acid
+0.8
N.D.
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
N.D.
N.D.
+0.4
-0.1
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