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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9895 and 9896 are separated by 534 nucleotides
9896 and 9897 are separated by 368 nucleotides
9897 and 9898 are separated by 1991 nucleotides
9898 and 9899 are separated by 288 nucleotides
mRNA_1527: 9895 - KOG3272 Predicted coiled-coil protein, at 515,504 to 516,509
9895
mRNA_1528: 9896 - K06030 MFN mitofusin, at 517,044 to 520,163
9896
mRNA_1529: 9897 - K12605 CNOT2, NOT2 CCR4-NOT transcription complex subunit 2, at 520,532 to 522,546
9897
mRNA_1530: 9898 - K15296 NAPA, SNAPA, SEC17 alpha-soluble NSF attachment protein, at 524,538 to 525,796
9898
mRNA_1531: 9899 - KOG1852 Cell cycle-associated protein, at 526,085 to 527,071
9899
Group
Condition
mRNA
_1527
mRNA
_1528
mRNA
_1529
mRNA
_1530
mRNA
_1531
9895
9896
9897
9898
9899
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-1.6
N.D.
+0.0
growth on ypd
YPD
-0.9
N.D.
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-1.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.7
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.4
N.D.
-1.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-1.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-1.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.5
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.5
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.0
N.D.
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
-0.2
N.D.
-0.6
auxotrophy
Dropout Complete
-0.3
N.D.
+0.4
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
-1.0
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+1.3
N.D.
+0.3
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