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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9900 and 9901 are separated by 200 nucleotides
9901 and 9902 are separated by 214 nucleotides
9902 and 9903 are separated by 459 nucleotides
9903 and 9904 are separated by 120 nucleotides
mRNA_1532: 9900 - K00766 trpD anthranilate phosphoribosyltransferase, at 527,155 to 528,581
9900
mRNA_1533: 9901 - K04649 HIP2, UBC1 ubiquitin-conjugating enzyme (huntingtin interacting protein 2), at 528,782 to 530,057
9901
mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530,272 to 532,362
9902
mRNA_1535: 9903 - K12471 EPN epsin, at 532,822 to 534,645
9903
mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534,766 to 537,382
9904
Group
Condition
mRNA
_1532
mRNA
_1533
mRNA
_1534
mRNA
_1535
mRNA
_1536
9900
9901
9902
9903
9904
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
-0.5
-0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
-0.0
+0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.6
+0.1
-0.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
+0.0
-1.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.7
-0.2
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.9
+0.5
-0.2
+0.4
auxotrophy
YNB Glucose
N.D.
-0.6
+0.5
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.6
+0.3
+0.3
+0.0
growth on ypd
YPD
N.D.
-0.2
-0.3
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.2
-0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.6
+0.6
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.4
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.5
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-0.3
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.7
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.9
+1.7
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.6
+0.0
+0.5
auxotrophy
Dropout Complete
N.D.
-0.3
+0.8
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.7
+0.6
+0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
+1.7
+0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.0
+2.1
+0.5
+0.1
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