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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9904 and 9905 are separated by 337 nucleotides
9905 and 9906 are separated by 254 nucleotides
9906 and 9907 are separated by 79 nucleotides
9907 and 9908 are separated by 263 nucleotides
mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534,766 to 537,382
9904
mRNA_1537: 9905 - K05284 PIGM phosphatidylinositol glycan, class M, at 537,720 to 539,172
9905
mRNA_1538: 9906 - K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10, at 539,427 to 544,024
9906
mRNA_1539: 9907 - K13617 PPME1 protein phosphatase methylesterase 1, at 544,104 to 545,858
9907
mRNA_1540: 9908 - K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e, at 546,122 to 547,305
9908
Group
Condition
mRNA
_1536
mRNA
_1537
mRNA
_1538
mRNA
_1539
mRNA
_1540
9904
9905
9906
9907
9908
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-1.4
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-0.6
+0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.5
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.1
+0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.7
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.5
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.4
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.9
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.6
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.7
+0.2
N.D.
growth on ypd
YPD
-0.1
N.D.
+1.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+1.3
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+1.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.9
+0.1
N.D.
auxotrophy
YNB Glucose
-0.2
N.D.
+1.6
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+1.5
+0.3
N.D.
auxotrophy
Dropout Complete
+0.0
N.D.
+1.9
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+1.6
+0.1
N.D.
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