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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9906 and 9907 are separated by 79 nucleotides
9907 and 9908 are separated by 263 nucleotides
9908 and 9909 are separated by 1782 nucleotides
9909 and 9910 are separated by 456 nucleotides
mRNA_1538: 9906 - K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10, at 539,427 to 544,024
9906
mRNA_1539: 9907 - K13617 PPME1 protein phosphatase methylesterase 1, at 544,104 to 545,858
9907
mRNA_1540: 9908 - K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e, at 546,122 to 547,305
9908
mRNA_1541: 9909 - K14753 RACK1 guanine nucleotide-binding protein subunit beta-2-like 1 protein, at 549,088 to 551,017
9909
mRNA_1542: 9910 - K01834 PGAM, gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 551,474 to 552,455
9910
Group
Condition
mRNA
_1538
mRNA
_1539
mRNA
_1540
mRNA
_1541
mRNA
_1542
9906
9907
9908
9909
9910
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.4
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.3
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.6
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.3
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.6
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.0
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.0
N.D.
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.3
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.2
N.D.
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
+0.2
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.1
N.D.
N.D.
N.D.
growth on ypd
YPD
+1.1
+0.2
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
+0.0
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.8
-0.2
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.6
+0.1
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.5
+0.3
N.D.
N.D.
N.D.
auxotrophy
Dropout Complete
+1.9
-0.0
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose
+1.6
+0.3
N.D.
N.D.
N.D.
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