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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9908 and 9909 are separated by 1782 nucleotides
9909 and 9910 are separated by 456 nucleotides
9910 and 9911 are separated by 514 nucleotides
9911 and 9912 are separated by 1478 nucleotides
mRNA_1540: 9908 - K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e, at 546,122 to 547,305
9908
mRNA_1541: 9909 - K14753 RACK1 guanine nucleotide-binding protein subunit beta-2-like 1 protein, at 549,088 to 551,017
9909
mRNA_1542: 9910 - K01834 PGAM, gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 551,474 to 552,455
9910
mRNA_1543: 9911 - Hypothetical Protein, at 552,970 to 553,858
9911
mRNA_1544: 9912 - K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4, at 555,337 to 558,196
9912
Group
Condition
mRNA
_1540
mRNA
_1541
mRNA
_1542
mRNA
_1543
mRNA
_1544
9908
9909
9910
9911
9912
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-1.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.9
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.9
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.6
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.7
-0.1
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.7
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+1.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+1.0
+0.3
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