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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9910 and 9911 are separated by 514 nucleotides
9911 and 9912 are separated by 1478 nucleotides
9912 and 9913 are separated by 219 nucleotides
9913 and 9914 are separated by 485 nucleotides
mRNA_1542: 9910 - K01834 PGAM, gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 551,474 to 552,455
9910
mRNA_1543: 9911 - Hypothetical Protein, at 552,970 to 553,858
9911
mRNA_1544: 9912 - K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4, at 555,337 to 558,196
9912
mRNA_1545: 9913 - Hypothetical Protein, at 558,416 to 558,832
9913
mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559,318 to 562,481
9914
Group
Condition
mRNA
_1542
mRNA
_1543
mRNA
_1544
mRNA
_1545
mRNA
_1546
9910
9911
9912
9913
9914
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.9
+0.2
-0.1
-1.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.9
+0.0
+0.0
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.3
+0.1
-2.1
auxotrophy
YNB Glucose
N.D.
+0.4
-0.3
-0.1
-1.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.0
-0.1
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
+0.1
-1.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-1.1
-0.1
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
+0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.1
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.0
-0.1
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.3
+0.1
-0.6
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.0
+0.3
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.1
+0.0
-0.8
auxotrophy
Dropout Complete
N.D.
+0.3
-0.1
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.3
-0.6
+1.4
growth on oleic acid
YNB Oleic Acid
N.D.
+1.2
-0.1
+0.2
-1.5
growth on ypd
YPD
N.D.
+0.7
-0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.5
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.7
-0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.0
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.1
-0.1
+1.0
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