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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9911 and 9912 are separated by 1478 nucleotides
9912 and 9913 are separated by 219 nucleotides
9913 and 9914 are separated by 485 nucleotides
9914 and 9915 are separated by 103 nucleotides
mRNA_1543: 9911 - Hypothetical Protein, at 552,970 to 553,858
9911
mRNA_1544: 9912 - K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4, at 555,337 to 558,196
9912
mRNA_1545: 9913 - Hypothetical Protein, at 558,416 to 558,832
9913
mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559,318 to 562,481
9914
mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562,585 to 566,021
9915
Group
Condition
mRNA
_1543
mRNA
_1544
mRNA
_1545
mRNA
_1546
mRNA
_1547
9911
9912
9913
9914
9915
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.2
-0.1
-1.9
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.0
+0.0
-1.9
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+0.1
-2.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.6
+1.4
-2.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.1
-1.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-1.1
-0.1
-0.2
+0.6
-0.0
auxotrophy
YNB Glucose
+0.4
-0.3
-0.1
-1.1
+0.6
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.0
-0.8
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.3
+0.1
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.1
-1.1
+0.6
auxotrophy
Dropout Complete
+0.3
-0.1
+0.0
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
-0.1
-0.9
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.0
-0.1
-0.3
+0.7
growth on oleic acid
YNB Glucose
+0.4
-0.0
+0.3
-1.0
+0.7
growth on oleic acid
YNB Oleic Acid
+1.2
-0.1
+0.2
-1.5
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.0
-0.5
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.3
-0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.5
+0.3
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
-0.1
+0.3
+0.1
growth on ypd
YPD
+0.7
-0.0
-0.3
-0.0
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
-0.1
+1.0
+0.3
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