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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9915 and 9916 are separated by 531 nucleotides
9916 and 9917 are separated by 854 nucleotides
9917 and 9918 are separated by 58 nucleotides
9918 and 9919 are separated by 1069 nucleotides
mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562,585 to 566,021
9915
mRNA_1548: 9916 - K07937 ARF1 ADP-ribosylation factor 1, at 566,553 to 567,814
9916
mRNA_1549: 9917 - BLAST putative TspO/MBR family containing protein [Rhizocto..., at 568,669 to 569,316
9917
mRNA_1550: 9918 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 569,375 to 570,862
9918
mRNA_1551: 9919 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 571,932 to 573,047
9919
Group
Condition
mRNA
_1547
mRNA
_1548
mRNA
_1549
mRNA
_1550
mRNA
_1551
9915
9916
9917
9918
9919
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
N.D.
-0.4
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
-0.1
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
-0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.4
-0.5
-0.3
auxotrophy
Dropout Complete
+0.1
N.D.
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
-0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.2
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
+0.1
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.2
+0.4
-0.2
growth on ypd
YPD
+0.8
N.D.
-0.6
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
+0.2
-0.0
auxotrophy
YNB Glucose
+0.6
N.D.
+0.5
-0.6
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.2
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
+0.5
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.2
-0.1
growth on oleic acid
YNB Glucose
+0.7
N.D.
+0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.2
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
+0.3
+0.4
-0.1
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