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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9920 and 9921 are separated by 104 nucleotides
9921 and 9922 are separated by 84 nucleotides
9922 and 9923 are separated by 328 nucleotides
9923 and 9924 are separated by 84 nucleotides
mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573,433 to 575,580
9920
mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575,685 to 583,746
9921
mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583,831 to 584,732
9922
mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995
9923
mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305
9924
Group
Condition
mRNA
_1552
mRNA
_1553
mRNA
_1554
mRNA
_1555
mRNA
_1556
9920
9921
9922
9923
9924
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.6
-0.1
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.2
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.7
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.4
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.3
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
+0.4
-0.2
growth on ypd
YPD
-0.4
-0.0
-0.3
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
-0.2
-0.3
-0.0
-0.1
auxotrophy
Dropout Complete
-0.3
-0.0
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.1
+0.0
+0.5
auxotrophy
YNB Glucose
-0.4
-0.0
+0.1
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
-0.0
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.3
+0.2
+1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.6
+0.1
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
+0.8
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
+0.5
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.4
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.3
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
+0.4
+0.2
+0.5
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