Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9920 and 9921 are separated by 104 nucleotides9921 and 9922 are separated by 84 nucleotides9922 and 9923 are separated by 328 nucleotides9923 and 9924 are separated by 84 nucleotides mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573,433 to 575,580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575,685 to 583,746 9921 mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583,831 to 584,732 9922 mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305 9924
Group Condition mRNA_1552 mRNA_1553 mRNA_1554 mRNA_1555 mRNA_1556
9920 9921 9922 9923 9924
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 -0.6 -0.1 -0.7
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.2 -0.2 +0.2 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.1 -0.2 -0.1 -0.3
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.1 -0.7 -0.1 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 +0.1 -0.4 +0.2 -0.1
growth on oleic acid YNB Glucose -0.0 +0.0 -0.3 +0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 -0.4 +0.4 -0.2
growth on ypd YPD -0.4 -0.0 -0.3 +0.5 +0.1
growth on oleic acid YNB Oleic Acid +0.5 -0.2 -0.3 -0.0 -0.1
auxotrophy Dropout Complete -0.3 -0.0 -0.2 +0.2 +0.2
growth on ricinoleic acid YNB Glucose -0.4 +0.1 +0.4 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 -0.1 +0.0 +0.5
auxotrophy YNB Glucose -0.4 -0.0 +0.1 +0.4 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.5 -0.0 -0.0 +0.2 +0.6
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.2 -0.3 +0.2 +1.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 +0.6 +0.1 +0.0 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.1 +0.8 +0.1 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.0 +0.5 +0.2 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.1 +0.4 +0.4 +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.1 +0.3 +0.2 +0.6
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.0 +0.4 +0.2 +0.5
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