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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9922 and 9923 are separated by 328 nucleotides
9923 and 9924 are separated by 84 nucleotides
9924 and 9925 are separated by 172 nucleotides
9925 and 9926 are separated by 263 nucleotides
mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583,831 to 584,732
9922
mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995
9923
mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305
9924
mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588,478 to 590,403
9925
mRNA_1558: 9926 - KOG4155 FOG WD40 repeat, at 590,667 to 593,724
9926
Group
Condition
mRNA
_1554
mRNA
_1555
mRNA
_1556
mRNA
_1557
mRNA
_1558
9922
9923
9924
9925
9926
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.1
-2.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.3
-0.5
-1.0
growth on oleic acid
YNB Glucose
-0.3
+0.2
-0.1
-0.4
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
+0.2
-0.5
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.3
+0.4
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.1
-0.7
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.1
+0.2
-0.0
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.4
-0.2
-0.2
+0.7
growth on ypd
YPD
-0.3
+0.5
+0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.1
+0.1
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.6
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
+0.4
-0.0
auxotrophy
YNB Glucose
+0.1
+0.4
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.5
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.2
+0.5
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+1.0
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
+0.4
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.1
+0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
+0.6
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
+0.4
+0.1
+0.9
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