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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9923 and 9924 are separated by 84 nucleotides
9924 and 9925 are separated by 172 nucleotides
9925 and 9926 are separated by 263 nucleotides
9926 and 9927 are separated by 608 nucleotides
mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585,061 to 586,995
9923
mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587,080 to 588,305
9924
mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588,478 to 590,403
9925
mRNA_1558: 9926 - KOG4155 FOG WD40 repeat, at 590,667 to 593,724
9926
mRNA_1559: 9927 - Hypothetical Protein, at 594,333 to 596,246
9927
Group
Condition
mRNA
_1555
mRNA
_1556
mRNA
_1557
mRNA
_1558
mRNA
_1559
9923
9924
9925
9926
9927
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
-0.5
-1.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-2.0
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
-0.5
-0.7
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.4
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.4
-0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.7
+0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.6
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
-0.3
+0.2
N.D.
auxotrophy
YNB Glucose
+0.4
+0.2
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
+0.7
N.D.
growth on ypd
YPD
+0.5
+0.1
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
+0.7
N.D.
auxotrophy
Dropout Complete
+0.2
+0.2
+0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.5
-0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+1.0
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.6
+0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.1
+0.9
N.D.
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