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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9932 and 9933 are separated by 1261 nucleotides
9933 and 9934 are separated by 834 nucleotides
9934 and 9935 are separated by 190 nucleotides
9935 and 9936 are separated by 394 nucleotides
mRNA_1564: 9932 - Hypothetical Protein, at 602,945 to 603,352
9932
mRNA_1565: 9933 - KOG1860 Nuclear protein export factor, at 604,614 to 609,512
9933
mRNA_1566: 9934 - Hypothetical Protein, at 610,347 to 612,663
9934
mRNA_1567: 9935 - KOG4129 Exopolyphosphatases and related proteins, at 612,854 to 615,039
9935
mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615,434 to 616,155
9936
Group
Condition
mRNA
_1564
mRNA
_1565
mRNA
_1566
mRNA
_1567
mRNA
_1568
9932
9933
9934
9935
9936
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.0
-2.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.0
-2.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
+0.1
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.0
-1.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.7
+0.2
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
+0.4
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.6
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
-0.7
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
+0.0
-0.6
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
+0.8
-0.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.6
+0.4
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.1
+0.5
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
+0.6
+0.4
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