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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9935 and 9936 are separated by 394 nucleotides
9936 and 9937 are separated by 175 nucleotides
9937 and 9938 are separated by 191 nucleotides
9938 and 9939 are separated by 792 nucleotides
mRNA_1567: 9935 - KOG4129 Exopolyphosphatases and related proteins, at 612,854 to 615,039
9935
mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615,434 to 616,155
9936
mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616,331 to 617,555
9937
mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617,747 to 619,889
9938
mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620,682 to 623,667
9939
Group
Condition
mRNA
_1567
mRNA
_1568
mRNA
_1569
mRNA
_1570
mRNA
_1571
9935
9936
9937
9938
9939
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-2.3
-0.6
-0.1
-1.1
growth on ypd
YPD
-0.2
+0.2
-1.0
-0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.8
-1.3
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.9
-0.9
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-1.0
-0.6
-0.2
+0.5
growth on oleic acid
YNB Glucose
+0.1
-1.3
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-2.6
+1.6
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.9
-0.2
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
-0.9
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.6
-0.0
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.7
+1.6
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.8
+0.6
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+1.2
+0.2
-0.1
auxotrophy
Dropout Complete
+0.4
-0.5
+0.7
-0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
-0.0
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+1.0
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.6
+2.1
+0.2
+0.3
auxotrophy
YNB Glucose
+0.6
+0.4
+0.4
+0.2
+0.4
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