Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9935 and 9936 are separated by 394 nucleotides9936 and 9937 are separated by 175 nucleotides9937 and 9938 are separated by 191 nucleotides9938 and 9939 are separated by 792 nucleotides mRNA_1567: 9935 - KOG4129 Exopolyphosphatases and related proteins, at 612,854 to 615,039 9935 mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615,434 to 616,155 9936 mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616,331 to 617,555 9937 mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617,747 to 619,889 9938 mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620,682 to 623,667 9939
Group Condition mRNA_1567 mRNA_1568 mRNA_1569 mRNA_1570 mRNA_1571
9935 9936 9937 9938 9939
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -2.3 -0.6 -0.1 -1.1
growth on ypd YPD -0.2 +0.2 -1.0 -0.2 -0.8
facs on lipid accumulation Sorted High BODIPY Gate +0.8 -0.8 -1.3 -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.9 -0.9 -0.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -1.0 -0.6 -0.2 +0.5
growth on oleic acid YNB Glucose +0.1 -1.3 +0.1 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -2.6 +1.6 -0.1 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.9 -0.2 +0.0 +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.3 -0.1 -0.1 +0.1 -0.6
ypd buoyancy 40 hrs High Buoyancy +0.2 +0.3 -0.9 +0.2 -0.0
growth on oleic acid YNB Oleic Acid -0.1 -0.3 +0.3 +0.0 -0.1
growth on ricinoleic acid YNB Glucose +0.4 -0.6 -0.0 +0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 -0.7 +1.6 +0.0 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.8 +0.6 +0.2 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.3 +0.2 +0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1 +1.2 +0.2 -0.1
auxotrophy Dropout Complete +0.4 -0.5 +0.7 -0.0 +0.6
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.5 -0.0 +0.3 +0.5
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.1 +1.0 +0.1 +0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.6 +2.1 +0.2 +0.3
auxotrophy YNB Glucose +0.6 +0.4 +0.4 +0.2 +0.4
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