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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9939 and 9940 are separated by 505 nucleotides
9940 and 9941 are separated by 534 nucleotides
9941 and 9942 are separated by 161 nucleotides
9942 and 9943 are separated by 566 nucleotides
mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620,682 to 623,667
9939
mRNA_1572: 9940 - K02139 ATPeFF, ATP17 F-type H+-transporting ATPase subunit f, at 624,173 to 624,749
9940
mRNA_1573: 9941 - KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily), at 625,284 to 628,967
9941
mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629,129 to 634,398
9942
mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634,965 to 635,420
9943
Group
Condition
mRNA
_1571
mRNA
_1572
mRNA
_1573
mRNA
_1574
mRNA
_1575
9939
9940
9941
9942
9943
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.1
-2.9
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.2
-2.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-0.5
-1.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.5
-1.8
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-0.5
-2.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.4
-1.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
-1.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.4
-0.4
-0.3
auxotrophy
Dropout Complete
+0.6
N.D.
-0.1
-0.8
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
-0.4
+0.2
auxotrophy
YNB Glucose
+0.4
N.D.
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
+0.7
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
+0.1
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
-0.3
+0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
+0.3
-1.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.2
-0.2
+0.2
growth on ypd
YPD
-0.8
N.D.
-0.0
+1.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.2
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.6
-0.1
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