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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9940 and 9941 are separated by 534 nucleotides
9941 and 9942 are separated by 161 nucleotides
9942 and 9943 are separated by 566 nucleotides
9943 and 9944 are separated by 668 nucleotides
mRNA_1572: 9940 - K02139 ATPeFF, ATP17 F-type H+-transporting ATPase subunit f, at 624,173 to 624,749
9940
mRNA_1573: 9941 - KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily), at 625,284 to 628,967
9941
mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629,129 to 634,398
9942
mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634,965 to 635,420
9943
mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636,089 to 637,669
9944
Group
Condition
mRNA
_1572
mRNA
_1573
mRNA
_1574
mRNA
_1575
mRNA
_1576
9940
9941
9942
9943
9944
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-2.9
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-1.5
+0.2
-1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
-1.8
+0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-1.1
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-2.1
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-2.3
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-1.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.4
+0.2
-1.1
auxotrophy
Dropout Complete
N.D.
-0.1
-0.8
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
+0.2
-1.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.0
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.4
-0.3
+0.3
auxotrophy
YNB Glucose
N.D.
-0.2
-0.2
-0.4
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-1.1
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.0
+0.0
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.6
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.4
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.1
+0.5
+0.3
growth on ypd
YPD
N.D.
-0.0
+1.1
-0.1
+0.8
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