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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9943 and 9944 are separated by 668 nucleotides
9944 and 9945 are separated by 187 nucleotides
9945 and 9946 are separated by 336 nucleotides
9946 and 9947 are separated by 1917 nucleotides
mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634,965 to 635,420
9943
mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636,089 to 637,669
9944
mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637,857 to 639,925
9945
mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640,262 to 646,467
9946
mRNA_1579: 9947 - Hypothetical Protein, at 648,385 to 649,747
9947
Group
Condition
mRNA
_1575
mRNA
_1576
mRNA
_1577
mRNA
_1578
mRNA
_1579
9943
9944
9945
9946
9947
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.9
N.D.
-0.3
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
N.D.
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-1.4
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
N.D.
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
N.D.
+0.0
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.6
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-1.1
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
-0.2
-0.1
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
N.D.
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
N.D.
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.4
N.D.
-0.0
-0.7
auxotrophy
YNB Glucose
-0.4
+0.4
N.D.
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.2
+0.1
N.D.
+0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
+0.4
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
N.D.
+0.6
-0.7
growth on ypd
YPD
-0.1
+0.8
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
N.D.
+0.2
+0.2
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