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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9944 and 9945 are separated by 187 nucleotides
9945 and 9946 are separated by 336 nucleotides
9946 and 9947 are separated by 1917 nucleotides
9947 and 9948 are separated by 285 nucleotides
mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636,089 to 637,669
9944
mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637,857 to 639,925
9945
mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640,262 to 646,467
9946
mRNA_1579: 9947 - Hypothetical Protein, at 648,385 to 649,747
9947
mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650,033 to 651,263
9948
Group
Condition
mRNA
_1576
mRNA
_1577
mRNA
_1578
mRNA
_1579
mRNA
_1580
9944
9945
9946
9947
9948
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
N.D.
-0.1
-0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
-0.3
-1.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
N.D.
-0.0
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.1
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
N.D.
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
-0.7
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.0
-1.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
-0.2
-0.2
auxotrophy
Dropout Complete
-0.1
N.D.
-0.2
-0.3
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.0
-0.4
+0.0
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.3
-0.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.0
-0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.4
-0.5
+0.0
auxotrophy
YNB Glucose
+0.4
N.D.
+0.0
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.3
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.6
-0.7
+0.8
growth on ypd
YPD
+0.8
N.D.
-0.0
+0.2
+0.2
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