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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9946 and 9947 are separated by 1917 nucleotides
9947 and 9948 are separated by 285 nucleotides
9948 and 9949 are separated by 523 nucleotides
9949 and 9950 are separated by 597 nucleotides
mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640,262 to 646,467
9946
mRNA_1579: 9947 - Hypothetical Protein, at 648,385 to 649,747
9947
mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650,033 to 651,263
9948
mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651,787 to 652,843
9949
mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653,441 to 655,468
9950
Group
Condition
mRNA
_1578
mRNA
_1579
mRNA
_1580
mRNA
_1581
mRNA
_1582
9946
9947
9948
9949
9950
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.7
-0.2
-0.1
-2.9
auxotrophy
Dropout Complete
-0.2
-0.3
+0.1
-0.3
-2.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
+0.0
-0.2
-2.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.7
-0.3
-0.2
-1.9
growth on oleic acid
YNB Glucose
+0.0
-0.4
-0.1
-0.1
-2.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.7
+0.2
-0.5
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.5
+0.0
-0.6
-1.8
growth on oleic acid
YNB Oleic Acid
+0.0
-1.0
+0.2
-0.9
-0.5
auxotrophy
YNB Glucose
+0.0
-0.3
+0.2
-0.3
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.7
+0.8
-0.7
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.4
+0.4
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
+0.0
+0.3
+0.2
growth on ypd
YPD
-0.0
+0.2
+0.2
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.6
+0.7
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.4
+0.3
-1.0
+1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.2
+0.3
-0.6
+2.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
-0.5
+0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.2
+0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.0
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.1
-0.2
+1.6
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