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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9949 and 9950 are separated by 597 nucleotides
9950 and 9951 are separated by 162 nucleotides
9951 and 9952 are separated by 633 nucleotides
9952 and 9953 are separated by 1274 nucleotides
mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651,787 to 652,843
9949
mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653,441 to 655,468
9950
mRNA_1583: 9951 - HMMPfam-Mediator complex protein-PF10280, at 655,631 to 656,397
9951
mRNA_1584: 9952 - Hypothetical Protein, at 657,031 to 658,127
9952
mRNA_1585: 9953 - K00916 CTK1 CTD kinase subunit alpha, at 659,402 to 660,723
9953
Group
Condition
mRNA
_1581
mRNA
_1582
mRNA
_1583
mRNA
_1584
mRNA
_1585
9949
9950
9951
9952
9953
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-2.9
N.D.
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-2.6
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-2.5
N.D.
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-2.4
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-1.8
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-1.8
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.9
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.8
N.D.
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.9
-0.5
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-1.0
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.7
N.D.
N.D.
N.D.
growth on ypd
YPD
-0.3
+0.0
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-1.0
+1.0
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.6
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.4
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.3
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+1.6
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+2.1
N.D.
N.D.
N.D.
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