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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9953 and 9954 are separated by 154 nucleotides
9954 and 9955 are separated by 788 nucleotides
9955 and 9956 are separated by 307 nucleotides
9956 and 9957 are separated by 116 nucleotides
mRNA_1585: 9953 - K00916 CTK1 CTD kinase subunit alpha, at 659,402 to 660,723
9953
mRNA_1586: 9954 - BLAST ribosomal protein [Moniliophthora roreri MCA 2997], at 660,878 to 663,649
9954
mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664,438 to 664,902
9955
mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665,210 to 666,583
9956
mRNA_1589: 9957 - Hypothetical Protein, at 666,700 to 668,966
9957
Group
Condition
mRNA
_1585
mRNA
_1586
mRNA
_1587
mRNA
_1588
mRNA
_1589
9953
9954
9955
9956
9957
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.3
-2.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
-0.3
-1.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.3
-1.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
-0.2
-1.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.0
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.5
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.2
-1.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.1
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.4
-1.8
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.2
-1.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.5
-0.2
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.6
-1.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
-0.3
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.4
-1.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
-0.2
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
-0.5
+0.3
growth on ypd
YPD
N.D.
N.D.
-0.8
-0.2
+0.5
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