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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9955 and 9956 are separated by 307 nucleotides
9956 and 9957 are separated by 116 nucleotides
9957 and 9958 are separated by 735 nucleotides
9958 and 9959 are separated by 236 nucleotides
mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664,438 to 664,902
9955
mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665,210 to 666,583
9956
mRNA_1589: 9957 - Hypothetical Protein, at 666,700 to 668,966
9957
mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669,702 to 673,169
9958
mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711
9959
Group
Condition
mRNA
_1587
mRNA
_1588
mRNA
_1589
mRNA
_1590
mRNA
_1591
9955
9956
9957
9958
9959
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-2.0
-0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
-1.6
-0.9
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.2
-1.4
-0.4
-0.2
auxotrophy
Dropout Complete
+0.2
+0.2
-1.6
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-0.9
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-1.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.6
-1.7
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.5
+0.1
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.8
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-1.7
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
-1.8
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.4
-1.0
-0.3
-0.1
auxotrophy
YNB Glucose
+0.1
-0.0
-1.7
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
-0.9
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
-1.0
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.5
+0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
-1.3
+0.5
+0.6
growth on ypd
YPD
-0.8
-0.2
+0.5
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.8
+0.4
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.4
+0.9
+0.1
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