Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9956 and 9957 are separated by 116 nucleotides9957 and 9958 are separated by 735 nucleotides9958 and 9959 are separated by 236 nucleotides9959 and 9960 are separated by 550 nucleotides mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665,210 to 666,583 9956 mRNA_1589: 9957 - Hypothetical Protein, at 666,700 to 668,966 9957 mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669,702 to 673,169 9958 mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615 9960
Group Condition mRNA_1588 mRNA_1589 mRNA_1590 mRNA_1591 mRNA_1592
9956 9957 9958 9959 9960
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -1.6 -0.9 -0.3 -0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -2.0 -0.4 -0.6 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 -1.7 -0.5 -0.2 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.2 -1.4 -0.4 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -1.8 -0.1 +0.0 -0.4
auxotrophy Dropout Complete +0.2 -1.6 -0.3 -0.2 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.8 -0.3 -0.4 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.5 +0.1 -0.9 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.9 -0.1 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 -1.7 +0.3 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.9 -0.2 +0.1 +0.1
growth on oleic acid YNB Oleic Acid -0.2 -1.2 -0.1 +0.1 -0.1
auxotrophy YNB Glucose -0.0 -1.7 +0.2 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 -1.0 -0.3 -0.1 +0.1
growth on oleic acid YNB Glucose -0.1 -1.0 +0.2 +0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.3 -1.3 +0.5 +0.6 -0.2
growth on ricinoleic acid YNB Glucose -0.2 -0.3 -0.1 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 +0.3 -0.2 -0.2 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.8 +0.4 +0.7 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.4 +0.9 +0.1 -0.4
growth on ypd YPD -0.2 +0.5 +0.4 -0.3 -0.1
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