Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 9958 and 9959 are separated by 236 nucleotides9959 and 9960 are separated by 550 nucleotides9960 and 9961 are separated by 1031 nucleotides9961 and 9962 are separated by 1221 nucleotides mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669,702 to 673,169 9958 mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615 9960 mRNA_1593: 9961 - KOG4366 Predicted thioesterase, at 678,647 to 679,781 9961 mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049 9962
Group Condition mRNA_1590 mRNA_1591 mRNA_1592 mRNA_1593 mRNA_1594
9958 9959 9960 9961 9962
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.4 -0.2 -0.9 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.9 -0.3 -0.4 +0.2 +0.3
growth on oleic acid YNB Oleic Acid -0.1 +0.1 -0.1 -0.4 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 +0.2 -0.5 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.9 -0.2 +0.2 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.6 +0.1 +0.3 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 -0.2 -0.3 +0.1 +0.4
auxotrophy YNB Glucose 75mM Arginine -0.4 -0.2 +0.2 -0.1 -0.0
auxotrophy Dropout Complete -0.3 -0.2 +0.0 +0.1 +0.0
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.2 -0.2 +0.0 +0.1
growth on ricinoleic acid YNB Glucose -0.1 +0.1 +0.1 -0.2 +0.0
growth on oleic acid YNB Glucose +0.2 +0.2 -0.1 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +0.1 +0.1 +0.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.0 -0.4 +0.1 +0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 -0.1 +0.1 +0.1 +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.2 -0.2 +0.2 +0.4
growth on ypd YPD +0.4 -0.3 -0.1 +0.2 +0.4
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 +0.7 -0.4 +0.2 -0.3
auxotrophy YNB Glucose +0.2 +0.2 +0.1 +0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.9 +0.1 -0.4 +0.7 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.5 +0.6 -0.2 +0.4 +0.1
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