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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9958 and 9959 are separated by 236 nucleotides
9959 and 9960 are separated by 550 nucleotides
9960 and 9961 are separated by 1031 nucleotides
9961 and 9962 are separated by 1221 nucleotides
mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669,702 to 673,169
9958
mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711
9959
mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615
9960
mRNA_1593: 9961 - KOG4366 Predicted thioesterase, at 678,647 to 679,781
9961
mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049
9962
Group
Condition
mRNA
_1590
mRNA
_1591
mRNA
_1592
mRNA
_1593
mRNA
_1594
9958
9959
9960
9961
9962
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.4
-0.2
-0.9
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.3
-0.4
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.2
-0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.9
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.6
+0.1
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
-0.3
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
+0.2
-0.1
-0.0
auxotrophy
Dropout Complete
-0.3
-0.2
+0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.2
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.4
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
+0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-0.2
+0.2
+0.4
growth on ypd
YPD
+0.4
-0.3
-0.1
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.7
-0.4
+0.2
-0.3
auxotrophy
YNB Glucose
+0.2
+0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.1
-0.4
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.6
-0.2
+0.4
+0.1
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