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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9959 and 9960 are separated by 550 nucleotides
9960 and 9961 are separated by 1031 nucleotides
9961 and 9962 are separated by 1221 nucleotides
9962 and 9963 are separated by 308 nucleotides
mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711
9959
mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615
9960
mRNA_1593: 9961 - KOG4366 Predicted thioesterase, at 678,647 to 679,781
9961
mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049
9962
mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683,358 to 685,744
9963
Group
Condition
mRNA
_1591
mRNA
_1592
mRNA
_1593
mRNA
_1594
mRNA
_1595
9959
9960
9961
9962
9963
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.9
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.9
-0.2
+0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.5
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.1
+0.3
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
+0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
+0.4
N.D.
auxotrophy
Dropout Complete
-0.2
+0.0
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
+0.2
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
+0.1
+0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.4
+0.2
-0.3
N.D.
growth on ypd
YPD
-0.3
-0.1
+0.2
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.7
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.4
N.D.
auxotrophy
YNB Glucose
+0.2
+0.1
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.2
+0.4
+0.1
N.D.
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