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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9964 and 9965 are separated by 89 nucleotides
9965 and 9966 are separated by 267 nucleotides
9966 and 9967 are separated by 407 nucleotides
9967 and 9968 are separated by 498 nucleotides
mRNA_1596: 9964 - K14557 UTP6 U3 small nucleolar RNA-associated protein 6, at 686,125 to 688,577
9964
mRNA_1597: 9965 - Hypothetical Protein, at 688,667 to 689,443
9965
mRNA_1598: 9966 - Hypothetical Protein, at 689,711 to 690,052
9966
mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819
9967
mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945
9968
Group
Condition
mRNA
_1596
mRNA
_1597
mRNA
_1598
mRNA
_1599
mRNA
_1600
9964
9965
9966
9967
9968
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
N.D.
N.D.
-0.4
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-2.9
N.D.
N.D.
-0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
N.D.
N.D.
-1.1
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.0
N.D.
N.D.
+0.5
-0.5
auxotrophy
YNB Glucose
-1.9
N.D.
N.D.
-0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-1.3
N.D.
N.D.
-0.6
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
N.D.
-0.5
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.9
N.D.
N.D.
+0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.5
N.D.
N.D.
-0.1
-1.2
auxotrophy
Dropout Complete
-1.2
N.D.
N.D.
+0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
-0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.8
N.D.
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
-0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.9
N.D.
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.7
N.D.
N.D.
+0.1
+0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
N.D.
N.D.
-0.3
+0.2
growth on ypd
YPD
-0.0
N.D.
N.D.
+0.5
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
N.D.
+0.6
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
N.D.
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.0
N.D.
N.D.
+0.2
+0.5
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