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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9966 and 9967 are separated by 407 nucleotides
9967 and 9968 are separated by 498 nucleotides
9968 and 9969 are separated by 346 nucleotides
9969 and 9970 are separated by 277 nucleotides
mRNA_1598: 9966 - Hypothetical Protein, at 689,711 to 690,052
9966
mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819
9967
mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945
9968
mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694,292 to 695,992
9969
mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823
9970
Group
Condition
mRNA
_1598
mRNA
_1599
mRNA
_1600
mRNA
_1601
mRNA
_1602
9966
9967
9968
9969
9970
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-1.7
-0.6
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.1
-0.9
-0.5
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.7
-0.4
-0.6
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-1.2
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-1.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.6
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-1.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.0
-0.2
-0.8
auxotrophy
Dropout Complete
N.D.
+0.1
-0.6
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.5
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
-0.1
-0.7
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
-0.8
+0.3
+0.7
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.5
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
-0.5
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.5
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
+0.1
+0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.4
+0.3
+0.2
growth on ypd
YPD
N.D.
+0.5
+0.9
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.6
+0.5
+0.3
-0.1
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