Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9967 and 9968 are separated by 498 nucleotides9968 and 9969 are separated by 346 nucleotides9969 and 9970 are separated by 277 nucleotides9970 and 9971 are separated by 492 nucleotides mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694,292 to 695,992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699,316 to 700,594 9971
Group Condition mRNA_1599 mRNA_1600 mRNA_1601 mRNA_1602 mRNA_1603
9967 9968 9969 9970 9971
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -1.7 -0.6 -0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -1.1 -0.9 -0.5 +0.5 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.7 -0.4 -0.6 N.D.
growth on oleic acid YNB Oleic Acid -0.1 -1.2 -0.4 -0.0 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.5 -1.0 -0.1 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.6 -0.1 -0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.1 +0.3 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.0 -0.2 -0.8 N.D.
auxotrophy Dropout Complete +0.1 -0.6 -0.1 +0.0 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.5 -0.0 +0.1 N.D.
auxotrophy YNB Glucose -0.1 -0.7 +0.2 +0.3 N.D.
growth on ricinoleic acid YNB Glucose -0.6 -0.8 +0.3 +0.7 N.D.
growth on oleic acid YNB Glucose +0.1 -0.6 +0.1 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.5 -0.4 -0.5 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.5 -0.5 +0.1 -0.2 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.5 -0.5 -0.0 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.2 +0.3 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.2 +0.1 +0.8 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.4 +0.3 +0.2 N.D.
growth on ypd YPD +0.5 +0.9 +0.0 -0.2 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.6 +0.5 +0.3 -0.1 N.D.
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