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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9968 and 9969 are separated by 346 nucleotides
9969 and 9970 are separated by 277 nucleotides
9970 and 9971 are separated by 492 nucleotides
9971 and 9972 are separated by 143 nucleotides
mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945
9968
mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694,292 to 695,992
9969
mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823
9970
mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699,316 to 700,594
9971
mRNA_1604: 9972 - K02209 MCM5, CDC46 DNA replication licensing factor MCM5, at 700,738 to 703,638
9972
Group
Condition
mRNA
_1600
mRNA
_1601
mRNA
_1602
mRNA
_1603
mRNA
_1604
9968
9969
9970
9971
9972
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
-0.6
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.4
-0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-1.2
-0.4
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.5
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.1
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.6
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.6
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.4
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose
-0.7
+0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
+0.3
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.9
+0.0
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.8
N.D.
N.D.
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