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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9970 and 9971 are separated by 492 nucleotides
9971 and 9972 are separated by 143 nucleotides
9972 and 9973 are separated by 94 nucleotides
9973 and 9974 are separated by 412 nucleotides
mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823
9970
mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699,316 to 700,594
9971
mRNA_1604: 9972 - K02209 MCM5, CDC46 DNA replication licensing factor MCM5, at 700,738 to 703,638
9972
mRNA_1605: 9973 - Hypothetical Protein, at 703,733 to 704,608
9973
mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665
9974
Group
Condition
mRNA
_1602
mRNA
_1603
mRNA
_1604
mRNA
_1605
mRNA
_1606
9970
9971
9972
9973
9974
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
+0.2
-3.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
N.D.
N.D.
+0.3
-1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
N.D.
+0.5
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
N.D.
-0.4
-0.7
auxotrophy
Dropout Complete
+0.0
N.D.
N.D.
-0.1
-0.7
auxotrophy
YNB Glucose
+0.3
N.D.
N.D.
-0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
N.D.
+0.6
-0.7
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
N.D.
+0.4
-1.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
N.D.
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
N.D.
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
+0.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
+0.1
+0.4
growth on ypd
YPD
-0.2
N.D.
N.D.
-0.4
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
+0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
N.D.
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.7
N.D.
N.D.
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.4
+0.6
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