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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9972 and 9973 are separated by 94 nucleotides
9973 and 9974 are separated by 412 nucleotides
9974 and 9975 are separated by 506 nucleotides
9975 and 9976 are separated by 319 nucleotides
mRNA_1604: 9972 - K02209 MCM5, CDC46 DNA replication licensing factor MCM5, at 700,738 to 703,638
9972
mRNA_1605: 9973 - Hypothetical Protein, at 703,733 to 704,608
9973
mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665
9974
mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618
9975
mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637
9976
Group
Condition
mRNA
_1604
mRNA
_1605
mRNA
_1606
mRNA
_1607
mRNA
_1608
9972
9973
9974
9975
9976
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-3.2
-0.1
-1.2
auxotrophy
Dropout Complete
N.D.
-0.1
-0.7
+0.0
-0.6
auxotrophy
YNB Glucose
N.D.
-0.3
-0.4
+0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.7
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
-1.3
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-1.5
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.3
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
-1.4
+0.4
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.0
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.7
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
-0.2
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.5
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.4
-0.2
+0.6
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.6
+0.0
-0.0
growth on ypd
YPD
N.D.
-0.4
+0.8
+0.1
+0.8
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