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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9974 and 9975 are separated by 506 nucleotides
9975 and 9976 are separated by 319 nucleotides
9976 and 9977 are separated by 1127 nucleotides
9977 and 9978 are separated by 1196 nucleotides
mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665
9974
mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618
9975
mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637
9976
mRNA_1609: 9977 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 712,765 to 713,275
9977
mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757
9978
Group
Condition
mRNA
_1606
mRNA
_1607
mRNA
_1608
mRNA
_1609
mRNA
_1610
9974
9975
9976
9977
9978
ypd buoyancy
40 hrs No Buoyancy Separation
-3.2
-0.1
-1.2
-0.1
-1.3
auxotrophy
Dropout Complete
-0.7
+0.0
-0.6
-0.8
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
+0.0
-0.0
+0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
-0.2
-0.4
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.0
+0.1
+0.0
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.5
+0.2
+0.1
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.1
+0.0
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.2
-0.4
-0.4
auxotrophy
YNB Glucose
-0.4
+0.2
-0.5
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
+0.4
+0.3
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.0
-0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.0
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.3
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
-0.0
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.6
-0.0
-0.5
growth on oleic acid
YNB Glucose
+0.6
+0.0
-0.0
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
-0.2
-0.4
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.2
+0.4
+0.1
-0.1
growth on ypd
YPD
+0.8
+0.1
+0.8
-0.2
-0.4
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