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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9975 and 9976 are separated by 319 nucleotides
9976 and 9977 are separated by 1127 nucleotides
9977 and 9978 are separated by 1196 nucleotides
9978 and 9979 are separated by 144 nucleotides
mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618
9975
mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637
9976
mRNA_1609: 9977 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 712,765 to 713,275
9977
mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757
9978
mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266
9979
Group
Condition
mRNA
_1607
mRNA
_1608
mRNA
_1609
mRNA
_1610
mRNA
_1611
9975
9976
9977
9978
9979
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.2
-0.1
-1.3
N.D.
auxotrophy
Dropout Complete
+0.0
-0.6
-0.8
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.4
-0.8
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.0
-1.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
-0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.2
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
-0.5
+0.0
N.D.
auxotrophy
YNB Glucose
+0.2
-0.5
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
-0.2
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.6
-0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.2
-0.6
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.4
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.0
+0.1
N.D.
growth on ypd
YPD
+0.1
+0.8
-0.2
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.4
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
+0.3
-0.1
N.D.
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