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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9976 and 9977 are separated by 1127 nucleotides
9977 and 9978 are separated by 1196 nucleotides
9978 and 9979 are separated by 144 nucleotides
9979 and 9980 are separated by 261 nucleotides
mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709,938 to 711,637
9976
mRNA_1609: 9977 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 712,765 to 713,275
9977
mRNA_1610: 9978 - HMMPfam-CrcB-like protein-PF02537, at 714,472 to 715,757
9978
mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266
9979
mRNA_1612: 9980 - Hypothetical Protein, at 717,528 to 719,368
9980
Group
Condition
mRNA
_1608
mRNA
_1609
mRNA
_1610
mRNA
_1611
mRNA
_1612
9976
9977
9978
9979
9980
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.1
-1.3
N.D.
-0.5
auxotrophy
Dropout Complete
-0.6
-0.8
-0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.5
-0.3
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
-0.8
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-1.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
-0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.5
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.7
N.D.
+0.1
growth on ypd
YPD
+0.8
-0.2
-0.4
N.D.
-0.6
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.6
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose
-0.5
+0.2
-0.1
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.0
-0.5
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
+0.9
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
N.D.
+0.2
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