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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9979 and 9980 are separated by 261 nucleotides
9980 and 9981 are separated by 180 nucleotides
9981 and 9982 are separated by 90 nucleotides
9982 and 9983 are separated by 468 nucleotides
mRNA_1611: 9979 - K04708 E1.1.1.102 3-dehydrosphinganine reductase, at 715,902 to 717,266
9979
mRNA_1612: 9980 - Hypothetical Protein, at 717,528 to 719,368
9980
mRNA_1613: 9981 - K01228 GCS1 mannosyl-oligosaccharide glucosidase, at 719,549 to 722,839
9981
mRNA_1614: 9982 - KOG2819 Uncharacterized conserved protein, at 722,930 to 724,798
9982
mRNA_1615: 9983 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 725,267 to 727,926
9983
Group
Condition
mRNA
_1611
mRNA
_1612
mRNA
_1613
mRNA
_1614
mRNA
_1615
9979
9980
9981
9982
9983
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.2
-0.8
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.7
+1.8
-4.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.6
+0.3
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
+0.0
-1.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
+0.0
-1.2
growth on ypd
YPD
N.D.
-0.6
+0.2
-0.2
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.1
+0.0
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.3
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.6
+0.1
-0.3
auxotrophy
Dropout Complete
N.D.
+0.1
-0.6
+0.4
+0.2
auxotrophy
YNB Glucose
N.D.
+0.5
-0.8
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.3
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.7
+0.0
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
+0.2
+0.8
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.7
+1.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.3
+0.7
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.0
+0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.4
+0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.8
+1.5
+1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.8
+2.1
+1.3
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