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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9981 and 9982 are separated by 90 nucleotides
9982 and 9983 are separated by 468 nucleotides
9983 and 9984 are separated by 2019 nucleotides
9984 and 9985 are separated by 1099 nucleotides
mRNA_1613: 9981 - K01228 GCS1 mannosyl-oligosaccharide glucosidase, at 719,549 to 722,839
9981
mRNA_1614: 9982 - KOG2819 Uncharacterized conserved protein, at 722,930 to 724,798
9982
mRNA_1615: 9983 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 725,267 to 727,926
9983
mRNA_1616: 9984 - K03232 EEF1B elongation factor 1-beta, at 729,946 to 731,113
9984
mRNA_1617: 9985 - Hypothetical Protein, at 732,213 to 732,410
9985
Group
Condition
mRNA
_1613
mRNA
_1614
mRNA
_1615
mRNA
_1616
mRNA
_1617
9981
9982
9983
9984
9985
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+1.8
-4.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.8
-1.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
-1.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.3
-1.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-1.2
N.D.
N.D.
growth on ypd
YPD
+0.2
-0.2
-0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.3
-0.7
N.D.
N.D.
auxotrophy
YNB Glucose
-0.8
+0.2
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.6
+0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.0
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+1.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.8
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.4
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.7
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.7
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+1.5
+1.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+2.1
+1.3
N.D.
N.D.
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