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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9989 and 9990 are separated by 329 nucleotides
9990 and 9991 are separated by 482 nucleotides
9991 and 9992 are separated by 204 nucleotides
9992 and 9993 are separated by 295 nucleotides
mRNA_1621: 9989 - Hypothetical Protein, at 741,895 to 743,431
9989
mRNA_1622: 9990 - K17738 ARD D-arabinitol 2-dehydrogenase, at 743,761 to 745,808
9990
mRNA_1623: 9991 - Hypothetical Protein, at 746,291 to 747,597
9991
mRNA_1624: 9992 - BLAST calcium-transporting ATPase [Pseudozyma hubeiensi..., at 747,802 to 749,738
9992
mRNA_1625: 9993 - Hypothetical Protein, at 750,034 to 750,701
9993
Group
Condition
mRNA
_1621
mRNA
_1622
mRNA
_1623
mRNA
_1624
mRNA
_1625
9989
9990
9991
9992
9993
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.4
-1.0
N.D.
auxotrophy
Dropout Complete
-0.1
-0.1
-0.4
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
-0.8
-0.5
N.D.
auxotrophy
YNB Glucose
-0.2
+0.1
-0.8
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.5
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.5
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.4
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.7
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
-0.6
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
-1.1
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.3
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-0.5
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.5
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.4
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.1
+0.3
N.D.
growth on ypd
YPD
+0.3
-0.2
+0.5
+0.6
N.D.
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