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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9992 and 9993 are separated by 295 nucleotides
9993 and 9994 are separated by 94 nucleotides
9994 and 9995 are separated by 228 nucleotides
9995 and 9996 are separated by 207 nucleotides
mRNA_1624: 9992 - BLAST calcium-transporting ATPase [Pseudozyma hubeiensi..., at 747,802 to 749,738
9992
mRNA_1625: 9993 - Hypothetical Protein, at 750,034 to 750,701
9993
mRNA_1626: 9994 - Hypothetical Protein, at 750,796 to 751,505
9994
mRNA_1627: 9995 - K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase, at 751,734 to 753,010
9995
mRNA_1628: 9996 - Hypothetical Protein, at 753,218 to 753,980
9996
Group
Condition
mRNA
_1624
mRNA
_1625
mRNA
_1626
mRNA
_1627
mRNA
_1628
9992
9993
9994
9995
9996
auxotrophy
YNB Glucose
-0.2
N.D.
-0.0
-1.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-1.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.3
-0.5
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
-0.5
+0.2
-0.2
auxotrophy
Dropout Complete
-0.7
N.D.
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.6
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.5
N.D.
-0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.0
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.2
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.4
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.6
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.4
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
-0.5
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
+0.1
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.3
+0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.4
+0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.6
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+0.1
+1.1
+0.7
growth on ypd
YPD
+0.6
N.D.
-0.2
+1.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.3
+1.8
+0.5
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