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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9995 and 9996 are separated by 207 nucleotides
9996 and 9997 are separated by 791 nucleotides
9997 and 9998 are separated by 470 nucleotides
9998 and 9999 are separated by 357 nucleotides
mRNA_1627: 9995 - K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase, at 751,734 to 753,010
9995
mRNA_1628: 9996 - Hypothetical Protein, at 753,218 to 753,980
9996
mRNA_1629: 9997 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 754,772 to 756,288
9997
mRNA_1630: 9998 - SUPERFAMILY--SSF81383, at 756,759 to 757,602
9998
mRNA_1631: 9999 - BLAST Tyrosine-protein phosphatase non-receptor type 23 [St..., at 757,960 to 758,498
9999
Group
Condition
mRNA
_1627
mRNA
_1628
mRNA
_1629
mRNA
_1630
mRNA
_1631
9995
9996
9997
9998
9999
auxotrophy
YNB Glucose
-1.4
-0.5
+0.2
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.0
-0.5
+0.1
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.5
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.2
-0.1
+0.3
-0.6
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.2
+0.1
-0.4
auxotrophy
Dropout Complete
-0.2
-0.3
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
+0.4
-0.8
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.4
+0.5
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.6
-0.1
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.8
-0.2
-0.0
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.0
+1.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.0
+0.8
+0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.3
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.2
+0.7
+0.7
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
+0.7
-0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.7
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.2
+0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.6
+0.4
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.3
+0.8
+0.5
growth on ypd
YPD
+1.4
+0.1
+0.0
+0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+1.8
+0.5
+0.4
+0.2
-0.2
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