MetaCyc Pathway: superpathway of allantoin degradation in yeast in Rhodosporidium toruloides IFO0880
| Allantoinase: (S)-(+)-allantoin + H2O→allantoate + H+ (EC 3.5.2.5) |
| mRNA |
| Urea carboxylase: CO2 + urea + ATP + H2O→urea-1-carboxylate + ADP + 2 H+ + phosphate (EC 6.3.4.6) |
| No genes |
| Allantoicase: allantoate + H2O→(S)-ureidoglycolate + urea (EC 3.5.3.4) |
| mRNA |
| Allophanate hydrolase: urea-1-carboxylate + H2O→2 carbamate + H+ (EC 3.5.1.54) |
| No genes |
| carbamate + 2 H+→CO2 + ammonium (spontaneous) (EC 3.5.1.110; 3.5.1.54; 4.2.1.104) |
| mRNA |
| Ureidoglycolate lyase: (S)-ureidoglycolate→glyoxylate + urea (EC 4.3.2.3) |
| No genes |
Links:
- Pathway details at MetaCyc
- Fitness data for 3 genes
- All MetaCyc pathways for Rhodosporidium toruloides IFO0880
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information