MetaCyc Pathway: superpathway of aromatic amino acid biosynthesis in Rhodosporidium toruloides IFO0880

MetaCyc Pathway: superpathway of aromatic amino acid biosynthesis in Rhodosporidium toruloides IFO0880

3-deoxy-7-phosphoheptulonate synthase:
D-erythrose 4-phosphate + phosphoenolpyruvate + H₂O→3-deoxy-D-arabino-heptulosonate 7-phosphate + phosphate (EC 2.5.1.54)

mRNA_2234 (10602)

mRNA_3787 (12155)

mRNA_7166 (15534)

3-dehydroquinate synthase:
3-deoxy-D-arabino-heptulosonate 7-phosphate→3-dehydroquinate + phosphate (EC 4.2.3.4)

mRNA_5884 (14252)

3-dehydroquinate dehydratase:
3-dehydroquinate→3-dehydroshikimate + H₂O (EC 4.2.1.10)

mRNA_2204 (10572)

mRNA_4451 (12819)

mRNA_5884 (14252)

mRNA_8034 (16402)

mRNA_669 (9037)

Shikimate dehydrogenase (in reverse):
3-dehydroshikimate + NADPH + H⁺→shikimate + NADP⁺ (EC 1.1.1.25)

mRNA_5341 (13709)

mRNA_5884 (14252)

Shikimate kinase:
shikimate + ATP→shikimate 3-phosphate + ADP + H⁺ (EC 2.7.1.71)

mRNA_5884 (14252)

3-phosphoshikimate 1-carboxyvinyltransferase:
shikimate 3-phosphate + phosphoenolpyruvate→5-enolpyruvoyl-shikimate 3-phosphate + phosphate (EC 2.5.1.19)

mRNA_5884 (14252)

Chorismate synthase:
5-enolpyruvoyl-shikimate 3-phosphate→chorismate + phosphate (EC 4.2.3.5)

mRNA_5669 (14037)

Anthranilate synthase:
chorismate + L-glutamine→anthranilate + L-glutamate + H⁺ + pyruvate (EC 4.1.3.27)

mRNA_6741 (15109)

Chorismate mutase:
chorismate→prephenate (EC 5.4.99.5)

mRNA_1336 (9704)

Prephenate dehydratase:
prephenate + H⁺→3-phenyl-2-oxopropanoate + CO₂ + H₂O (EC 4.2.1.51)

No genes

Prephenate dehydrogenase:
prephenate + NAD⁺→3-(4-hydroxyphenyl)pyruvate + CO₂ + NADH (EC 1.3.1.12)

mRNA_7857 (16225)

Anthranilate phosphoribosyltransferase (in reverse):
anthranilate + 5-phospho-α-D-ribose 1-diphosphate→N-(5-phosphoribosyl)-anthranilate + diphosphate (EC 2.4.2.18)

mRNA_1532 (9900)

Phosphoribosylanthranilate isomerase:
N-(5-phosphoribosyl)-anthranilate→1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate (EC 5.3.1.24)

mRNA_8196 (16564)

Aspartate transaminase (in reverse):
3-phenyl-2-oxopropanoate + L-glutamate→L-phenylalanine + 2-oxoglutarate (EC 2.6.1.1; 2.6.1.27; 2.6.1.57)

mRNA_4039 (12407)

mRNA_4862 (13230)

mRNA_5562 (13930)

mRNA_5913 (14281)

mRNA_7697 (16065)

mRNA_172 (8540)

mRNA_568 (8936)

mRNA_1267 (9635)

Aspartate transaminase (in reverse):
3-(4-hydroxyphenyl)pyruvate + L-glutamate→L-tyrosine + 2-oxoglutarate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)

mRNA_4039 (12407)

mRNA_4862 (13230)

mRNA_5562 (13930)

mRNA_5913 (14281)

mRNA_7697 (16065)

mRNA_172 (8540)

mRNA_568 (8936)

mRNA_1267 (9635)

Indole-3-glycerol-phosphate synthase:
1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H⁺→(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO₂ + H₂O (EC 4.1.1.48)

No genes

Indole-3-glycerol-phosphate lyase:
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate→indole + D-glyceraldehyde 3-phosphate (EC 4.1.2.8; 4.2.1.20)

mRNA_894 (9262)

indole + L-serine→L-tryptophan + H₂O (EC 4.2.1.122; 4.2.1.20)

mRNA_894 (9262)

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information