MetaCyc Pathway: D-arabinose degradation I in Rhodosporidium toruloides IFO0880

Add experiment(s):


Arabinose isomerase:
D-arabinopyranose→D-ribulose (EC 5.3.1.3)
No genes
L-fuculokinase:
D-ribulose + ATP→D-ribulose 1-phosphate + ADP + H+ (EC 2.7.1.51)
No genes
L-fuculose-phosphate aldolase:
D-ribulose 1-phosphate→glycerone phosphate + glycolaldehyde (EC 4.1.2.17)
No genes
Glycolaldehyde dehydrogenase:
glycolaldehyde + NAD+ + H2O→glycolate + NADH + 2 H+ (EC 1.2.1.21)
mRNA_2053 (10421)
mRNA_2289 (10657)
mRNA_2380 (10748)
mRNA_2756 (11124)
mRNA_3674 (12042)
mRNA_3891 (12259)
mRNA_4582 (12950)
mRNA_5058 (13426)
mRNA_7955 (16323)
mRNA_8468 (16836)
mRNA_324 (8692)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information