MetaCyc Pathway: superpathway of ergosterol biosynthesis I in Rhodosporidium toruloides IFO0880

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Acetyl-CoA C-acyltransferase:
2 acetyl-CoA→acetoacetyl-CoA + coenzyme A
(EC 2.3.1.16; 2.3.1.9)
mRNA_5445 (13813)
mRNA_5687 (14055)
mRNA_6860 (15228)
mRNA_310 (8678)
mRNA_517 (8885)
mRNA_697 (9065)
Dimethylallyltranstransferase:
prenyl diphosphate + 3-methylbut-3-en-1-yl diphosphate→geranyl diphosphate + diphosphate
(EC 2.5.1.1)
mRNA_4576 (12944)
mRNA_8135 (16503)
Geranyltranstransferase:
geranyl diphosphate + 3-methylbut-3-en-1-yl diphosphate→(2E,6E)-farnesyl diphosphate + diphosphate
(EC 2.5.1.10)
mRNA_4576 (12944)
mRNA_8135 (16503)
Hydroxymethylglutaryl-CoA synthase:
acetoacetyl-CoA + acetyl-CoA + H2O→(S)-3-hydroxy-3-methylglutaryl-CoA + coenzyme A + H+
(EC 2.3.3.10)
mRNA_3754 (12122)
Hydroxymethylglutaryl-CoA reductase (NADPH) (in reverse):
(S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H+→(R)-mevalonate + coenzyme A + 2 NADP+
(EC 1.1.1.34)
mRNA_1206 (9574)
2 (2E,6E)-farnesyl diphosphate→presqualene diphosphate + diphosphate (EC 2.5.1.103; 2.5.1.21; 2.5.1.96)
mRNA_8223 (16591)
Mevalonate kinase:
(R)-mevalonate + ATP→(R)-5-phosphomevalonate + ADP + H+
(EC 2.7.1.36)
mRNA_390 (8758)
Squalene synthase:
presqualene diphosphate + NAD(P)H + H+→squalene + NAD(P)+ + diphosphate
(EC 2.5.1.21)
mRNA_8223 (16591)
Phosphomevalonate kinase:
(R)-5-phosphomevalonate + ATP→(R)-mevalonate diphosphate + ADP
(EC 2.7.4.2)
mRNA_334 (8702)
squalene + dioxygen + a reduced [NADPH-hemoprotein reductase]→(3S)-2,3-epoxy-2,3-dihydrosqualene + an oxidized [NADPH-hemoprotein reductase] + H2O (EC 1.14.14.17)
No genes
Diphosphomevalonate decarboxylase:
(R)-mevalonate diphosphate + ATP→3-methylbut-3-en-1-yl diphosphate + ADP + CO2 + phosphate
(EC 4.1.1.33)
mRNA_3542 (11910)
Lanosterol synthase:
(3S)-2,3-epoxy-2,3-dihydrosqualene→lanosterol
(EC 5.4.99.7)
mRNA_872 (9240)
Isopentenyl-diphosphate Delta-isomerase:
3-methylbut-3-en-1-yl diphosphate→prenyl diphosphate
(EC 5.3.3.2)
mRNA_7835 (16203)
lanosterol + 3 dioxygen + 3 a reduced [NADPH-hemoprotein reductase]→4,4-dimethyl-5-α-cholesta-8,14,24-trien-3-β-ol + formate + 3 an oxidized [NADPH-hemoprotein reductase] + H+ + 4 H2O (EC 1.14.14.154)
No genes
Delta(14)-sterol reductase (in reverse):
4,4-dimethyl-5-α-cholesta-8,14,24-trien-3-β-ol + NADPH + H+→14-demethyllanosterol + NADP+
(EC 1.3.1.70)
No genes
14-demethyllanosterol + 6 a ferrocytochrome b5 + 3 dioxygen + 5 H+→4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol + 6 a ferricytochrome b5 + 4 H2O (EC 1.14.18.9)
mRNA_8272 (16640)
Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating):
4α-carboxy-4β-methyl-5α-cholesta-8,24-dien-3β-ol + NAD(P)+→3-dehydro-4-methylzymosterol + CO2 + NAD(P)H
(EC 1.1.1.170)
No genes
3-keto-steroid reductase (in reverse):
3-dehydro-4-methylzymosterol + NADPH + H+→4α-methyl-zymosterol + NADP+
(EC 1.1.1.270)
No genes
4α-methyl-zymosterol + 6 a ferrocytochrome b5 + 3 dioxygen + 5 H+→4α-carboxy-5α-cholesta-8,24-dien-3β-ol + 6 a ferricytochrome b5 + 4 H2O (EC 1.14.18.9)
mRNA_8272 (16640)
Sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating):
4α-carboxy-5α-cholesta-8,24-dien-3β-ol + NAD(P)+→zymosterone + CO2 + NAD(P)H
(EC 1.1.1.170)
No genes
3-keto-steroid reductase (in reverse):
zymosterone + NADPH + H+→zymosterol + NADP+
(EC 1.1.1.270)
No genes
Sterol 24-C-methyltransferase:
zymosterol + S-adenosyl-L-methionine→fecosterol + S-adenosyl-L-homocysteine + H+
(EC 2.1.1.41)
mRNA_4692 (13060)
Cholestenol Delta-isomerase:
fecosterol→episterol
(EC 5.3.3.5)
No genes
episterol + 2 a ferrocytochrome b5 + dioxygen + 2 H+→ergosta-5,7,24(28)-trien-3β-ol + 2 a ferricytochrome b5 + 2 H2O (EC 1.14.19.20)
No genes
ergosta-5,7,24(28)-trien-3β-ol + dioxygen + a reduced [NADPH-hemoprotein reductase]→ergosta-5,7,22,24(28)-tetraen-3β-ol + an oxidized [NADPH-hemoprotein reductase] + 2 H2O (EC 1.14.19.41)
No genes
Delta(24(24(1)))-sterol reductase (in reverse):
ergosta-5,7,22,24(28)-tetraen-3β-ol + NADPH + H+→ergosterol + NADP+
(EC 1.3.1.71)
mRNA_2613 (10981)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information