MetaCyc Pathway: methanogenesis from acetate in Rhodosporidium toruloides IFO0880

Add experiment(s):


Acetate kinase:
acetate + ATP→acetyl phosphate + ADP
(EC 2.7.2.1; 2.7.2.15)
mRNA_5015 (13383)
Phosphate acetyltransferase (in reverse):
acetyl phosphate + coenzyme A→acetyl-CoA + phosphate
(EC 2.3.1.8)
No genes
CO-methylating acetyl-CoA synthase:
acetyl-CoA + a [Co(I) corrinoid Fe-S protein] + H+→carbon monoxide + a [methyl-Co(III) corrinoid Fe-S protein] + coenzyme A
(EC 2.3.1.169; 2.3.3.M4; 2.3.3.M5)
No genes
Carbon-monoxide dehydrogenase (ferredoxin):
carbon monoxide + 2 an oxidized ferredoxin [iron-sulfur] cluster + H2O→CO2 + 2 H+ + 2 a reduced ferredoxin [iron-sulfur] cluster
(EC 1.2.7.4; 2.3.3.M4; 2.3.3.M5)
No genes
a [methyl-Co(III) corrinoid Fe-S protein] + tetrahydrosarcinapterin→5-methyl-tetrahydrosarcinapterin + a [Co(I) corrinoid Fe-S protein] + H+ (EC 2.1.1.245; 2.3.3.M4)
No genes
5-methyl-tetrahydrosarcinapterin + coenzyme M→methyl-CoM + tetrahydrosarcinapterin
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information