MetaCyc Pathway: superpathway of polyamine biosynthesis I in Rhodosporidium toruloides IFO0880

Add experiment(s):


Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
No genes
Arginase:
L-arginine + H2O→L-ornithine + urea (EC 3.5.3.1)
mRNA_7813 (16181)
Lysine decarboxylase:
L-lysine + H+→cadaverine + CO2 (EC 4.1.1.18)
No genes
Adenosylmethionine decarboxylase:
S-adenosyl-L-methionine + H+→S-adenosyl 3-(methylsulfanyl)propylamine + CO2 (EC 4.1.1.50)
mRNA_2849 (11217)
Agmatinase:
agmatine + H2O→putrescine + urea (EC 3.5.3.11)
mRNA_1772 (10140)
Ornithine decarboxylase:
L-ornithine + H+→putrescine + CO2 (EC 4.1.1.17)
mRNA_4267 (12635)
cadaverine + S-adenosyl 3-(methylsulfanyl)propylamine→aminopropylcadaverine + S-methyl-5'-thioadenosine + H+
No genes
Spermidine synthase:
putrescine + S-adenosyl 3-(methylsulfanyl)propylamine→spermidine + S-methyl-5'-thioadenosine + H+ (EC 2.5.1.16)
mRNA_8465 (16833)

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information